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BioForge

New
GitHub TrendingGeneralby yojiro253-del

Turn any AI coding agent into a synthetic-biology research assistant. A $0 skill pack for Claude Code, Cursor, and OpenCode. Design-only, built for iGEM and student researchers.

Summary

BioForge transforms any AI coding agent into a synthetic-biology research assistant, enabling you to design genetic circuits, simulate biological systems, and analyze DNA sequences directly from your terminal.

  • It is a free, design-only skill pack tailored for iGEM teams and student researchers, providing ready-to-use tools for common synthetic biology workflows.

Install & Usage

1
Create the skills directory
mkdir -p .claude/skills
2
Download the skill file
mkdir -p .claude/skills && curl -o .claude/skills/bioforge.md https://raw.githubusercontent.com/yojiro253-del/BioForge/main/SKILL.md
3
Invoke in Claude Code
/bioforge

Use Cases

Design a genetic toggle switch with specified promoters and repressors for a bacterial chassis.
Simulate the behavior of a synthetic oscillator circuit over time using ordinary differential equations.
Generate a list of restriction enzyme cut sites for a given DNA sequence and suggest cloning strategies.
Analyze a metabolic pathway to identify rate-limiting steps and propose enzyme overexpression targets.
Convert a natural protein sequence into a codon-optimized version for expression in E. coli.
Design primers for Gibson assembly of a multi-gene construct from provided plasmid backbones.

Usage Examples

1

/bioforge design toggle switch with pLac and pTet promoters in E. coli

2

/bioforge simulate oscillator with parameters: k1=0.5, k2=0.3, degradation=0.1

3

/bioforge optimize codons for human insulin gene for E. coli expression

View source on GitHub
designagent

Security Audits

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Frequently Asked Questions

What is BioForge?

BioForge transforms any AI coding agent into a synthetic-biology research assistant, enabling you to design genetic circuits, simulate biological systems, and analyze DNA sequences directly from your terminal. It is a free, design-only skill pack tailored for iGEM teams and student researchers, providing ready-to-use tools for common synthetic biology workflows.

How to install BioForge?

To install BioForge: create the skills directory (mkdir -p .claude/skills), then run: mkdir -p .claude/skills && curl -o .claude/skills/bioforge.md https://raw.githubusercontent.com/yojiro253-del/BioForge/main/SKILL.md. Finally, /bioforge in Claude Code.

What is BioForge best for?

BioForge is a skill categorized under General. It is designed for: design, agent. Created by yojiro253-del.

What can I use BioForge for?

BioForge is useful for: Design a genetic toggle switch with specified promoters and repressors for a bacterial chassis.; Simulate the behavior of a synthetic oscillator circuit over time using ordinary differential equations.; Generate a list of restriction enzyme cut sites for a given DNA sequence and suggest cloning strategies.; Analyze a metabolic pathway to identify rate-limiting steps and propose enzyme overexpression targets.; Convert a natural protein sequence into a codon-optimized version for expression in E. coli.; Design primers for Gibson assembly of a multi-gene construct from provided plasmid backbones..