nextflow-development
NewRun nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.
Install & Usage
~/.claude.jsonAdd the configuration to "mcpServers": { "nextflow-development": { "command": "...", "args": [] } }
/mcpSecurity Audits
Frequently Asked Questions
What is nextflow-development?
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.
How to install nextflow-development?
To install nextflow-development: open your mcp config (~/.claude.json), then add the config to "mcpServers": { "nextflow-development": { "command": "...", "args": [] } }. Finally, /mcp in Claude Code.
What is nextflow-development best for?
nextflow-development is a mcp categorized under General. It is designed for: research, devops, data-&-analytics. Created by anthropics.