Building Knowledge Graphs from Unstructured Text with Claude

You have a pile of unstructured documents and need to answer questions that span them — "who works with people who worked on project X", "which vendors are connected to this incident". No single document contains the answer. RAG retrieval won't chain the facts for you. You need a knowledge graph: entities as nodes, typed relations as edges, so that multi-hop reasoning becomes graph traversal.

Building one used to mean training a named-entity recognizer on your domain, training a relation classifier, writing entity-resolution heuristics, and maintaining all three as your data shifted. With Claude, each of those stages becomes a prompt.

What You'll Learn

By the end of this guide you will be able to:

• Use structured outputs to extract typed entities and subject–predicate–object triples from arbitrary text with no training data
• Apply Claude-driven entity resolution to collapse surface-form variants into canonical nodes, replacing brittle string-similarity heuristics
• Assemble and query an in-memory graph, and run multi-hop questions by serializing subgraphs back to Claude
• Measure extraction quality with precision/recall against a gold set and reason about the cost/quality tradeoff between Haiku and Sonnet

Everything runs in memory with no database. The techniques transfer directly to Neo4j, Neptune, or a Postgres adjacency table when you need to scale.

Prerequisites

• Python 3.11+
• Anthropic API key (get one here)
• Basic familiarity with graphs (nodes, edges, traversal)

Setup

We use two models. Haiku handles the high-volume, schema-constrained extraction work where speed and cost matter more than nuance. Sonnet handles entity resolution and summarization, where the model needs to weigh conflicting evidence across documents.

import anthropic
from pydantic import BaseModel, Field
from typing import List, Optional
import networkx as nx
client = anthropic.Anthropic()
Define our output schema
class Entity(BaseModel):
    name: str = Field(description="The canonical name of the entity")
    type: str = Field(description="Entity type: PERSON, ORGANIZATION, LOCATION, EVENT, etc.")
    description: str = Field(description="One-line description for disambiguation")
class Relation(BaseModel):
    subject: str = Field(description="Name of the subject entity")
    predicate: str = Field(description="Relation type in present tense, e.g., 'works_for', 'launched'")
    object: str = Field(description="Name of the object entity")
class Extraction(BaseModel):
    entities: List[Entity]
    relations: List[Relation]

Building a Corpus

We need a handful of documents that talk about overlapping entities, so that entity resolution has real work to do. The Apollo program is a good test bed: six short Wikipedia summaries that all mention NASA, the Moon, several astronauts, and a launch vehicle — but each article names them slightly differently.

We fetch summaries from the Wikipedia REST API rather than full articles to keep token costs low. For a production pipeline you would chunk full documents; the extraction logic is identical.

import requests
def fetch_wikipedia_summary(title):
    url = f"https://en.wikipedia.org/api/rest_v1/page/summary/{title}"
    response = requests.get(url)
    response.raise_for_status()
    return response.json()["extract"]
documents = {
    "Apollo 11": fetch_wikipedia_summary("Apollo 11"),
    "Neil Armstrong": fetch_wikipedia_summary("Neil Armstrong"),
    "Buzz Aldrin": fetch_wikipedia_summary("Buzz Aldrin"),
    "NASA": fetch_wikipedia_summary("NASA"),
    "Saturn V": fetch_wikipedia_summary("Saturn V"),
    "Moon": fetch_wikipedia_summary("Moon"),
}

Entity and Relation Extraction

Classical NER tags spans of text with labels (PERSON, ORG, LOC). Classical relation extraction then classifies pairs of spans into relation types. Both traditionally require labeled training data per domain.

We collapse both stages into a single Claude call per document. The key is structured outputs: we define the output shape as a Pydantic model and pass it to client.messages.parse(). Claude's response is guaranteed to validate against that schema and comes back as a typed Python object — no regex parsing, no JSON decode errors, no defensive isinstance checks.

def extract_from_document(title, text):
    response = client.messages.parse(
        model="claude-3-haiku-20240307",
        max_tokens=2000,
        messages=[{
            "role": "user",
            "content": f"""Extract all entities and their relations from this text about {title}.
Text: {text}
Identify:
Entities: people, organizations, locations, events, missions, vehicles
Relations: meaningful connections between entities (e.g., 'commanded', 'launched', 'part_of')"""
        }],
        response_model=Extraction,
    )
    return response

Run extraction on all documents
all_extractions = {}
for title, text in documents.items():
    all_extractions[title] = extract_from_document(title, text)

Let's look at what was extracted. Notice how the same real-world entity appears under different surface forms across documents — this is the entity resolution problem we solve next.

Entity Resolution

The raw extraction gives us overlapping mentions: "NASA" and "National Aeronautics and Space Administration", "Neil Armstrong" and "Armstrong", possibly "the Moon" and "Moon". If we build a graph directly from this, we get a fractured mess where the same concept is split across disconnected nodes.

Traditional approaches use string similarity (edit distance, Jaccard on tokens) plus blocking rules. That works for typos but fails on "Edwin Aldrin" vs "Buzz Aldrin" — two names with zero character overlap that refer to the same person.

We instead ask Claude to cluster entities of each type, using the one-line descriptions from extraction as disambiguation context. The descriptions matter: "Armstrong — first person to walk on the Moon" and "Armstrong — jazz trumpeter" have the same name but should not merge.

def resolve_entities(extractions):
    # Collect all unique entities with their descriptions
    all_entities = {}
    for doc_title, extraction in extractions.items():
        for entity in extraction.entities:
            key = (entity.name, entity.type)
            if key not in all_entities:
                all_entities[key] = entity
    
    # Group by type and ask Claude to cluster
    entity_types = set(e.type for e in all_entities.values())
    alias_to_canonical = {}
    
    for etype in entity_types:
        type_entities = [e for e in all_entities.values() if e.type == etype]
        entity_list = "\n".join([f"- {e.name}: {e.description}" for e in type_entities])
        
        response = client.messages.parse(
            model="claude-3-sonnet-20240229",
            max_tokens=1000,
            messages=[{
                "role": "user",
                "content": f"""Group these {etype} entities that refer to the same real-world entity.
Entities:
{entity_list}
For each group, choose the most canonical name. Return a mapping from each original name to its canonical name."""
            }],
            response_model=dict,  # Returns {alias: canonical}
        )
        alias_to_canonical.update(response)
    
    return alias_to_canonical

Two failure modes to watch for. First, any raw name Claude leaves out of every cluster silently disappears from the graph — a production resolver should fall back to a single-element cluster for unmatched names so nothing is lost. Second, the resolver can over-merge: a specific mission like "Gemini 12" may get folded into the broader "Project Gemini" because the descriptions overlap. The first loses nodes, the second loses precision. Both are worth spot-checking in the output.

Assembling the Graph

With a clean alias map, we rewrite every relation endpoint to its canonical form and load the result into NetworkX. We use a MultiDiGraph because two entities can be connected by several distinct predicates ("launched from" and "operated by"), and direction matters ("Armstrong commanded Apollo 11" is not the same edge as "Apollo 11 commanded Armstrong").

Each node carries its type, the source documents it appeared in, and its description for downstream reasoning.

def build_knowledge_graph(extractions, alias_map):
    G = nx.MultiDiGraph()
    
    for doc_title, extraction in extractions.items():
        for entity in extraction.entities:
            canonical = alias_map.get(entity.name, entity.name)
            if not G.has_node(canonical):
                G.add_node(
                    canonical,
                    type=entity.type,
                    description=entity.description,
                    sources=set()
                )
            G.nodes[canonical]["sources"].add(doc_title)
        
        for relation in extraction.relations:
            subj = alias_map.get(relation.subject, relation.subject)
            obj = alias_map.get(relation.object, relation.object)
            G.add_edge(subj, obj, predicate=relation.predicate)
    
    return G
G = build_knowledge_graph(all_extractions, alias_map)

Querying the Graph with Multi-Hop Questions

Now for the payoff: answering questions that require chaining facts across documents. We serialize a relevant subgraph back to Claude and let it reason over the connected structure.

def query_graph(G, question):
    # Serialize the graph as a list of triples
    triples = []
    for u, v, data in G.edges(data=True):
        triples.append(f"({u}) --[{data['predicate']}]--> ({v})")
    
    graph_text = "\n".join(triples)
    
    response = client.messages.create(
        model="claude-3-sonnet-20240229",
        max_tokens=1000,
        messages=[{
            "role": "user",
            "content": f"""Given this knowledge graph:
{graph_text}
Answer the question: {question}
Trace your reasoning through the graph edges."""
        }]
    )
    return response.content[0].text
Example: multi-hop question
answer = query_graph(G, "Which astronauts worked on Apollo 11 and what were their roles?")
print(answer)

Measuring Quality

To trust your pipeline, measure precision and recall against a gold standard. Create a small annotated set of documents with known entities and relations, then compare your extraction output.

def evaluate_extraction(gold_entities, gold_relations, extracted):
    # Simple overlap metrics
    extracted_entities = set((e.name, e.type) for e in extracted.entities)
    gold_entity_set = set((e.name, e.type) for e in gold_entities)
    
    true_positives = extracted_entities & gold_entity_set
    precision = len(true_positives) / len(extracted_entities) if extracted_entities else 0
    recall = len(true_positives) / len(gold_entity_set) if gold_entity_set else 0
    
    return {"precision": precision, "recall": recall, "f1": 2  precision  recall / (precision + recall) if (precision + recall) else 0}

Key Takeaways

• No training data needed: Claude's structured outputs let you extract entities and relations from arbitrary text with a single prompt, replacing traditional NER and relation classification pipelines.
• Entity resolution is critical: Raw extraction produces fractured graphs. Use Claude to cluster surface-form variants into canonical nodes, handling cases like "Buzz Aldrin" vs "Edwin Aldrin" that string similarity misses.
• Model selection matters: Use Haiku for high-volume extraction where speed and cost dominate, and Sonnet for entity resolution and reasoning where nuance and accuracy are paramount.
• Graphs enable multi-hop reasoning: By serializing subgraphs back to Claude, you can answer questions that span multiple documents — something RAG alone struggles with.
• Measure and iterate: Always evaluate precision/recall against a gold set. Watch for silent node drops and over-merging during entity resolution.